PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0059s0358.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GATA
Protein Properties Length: 159aa    MW: 16665.8 Da    PI: 9.8825
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0059s0358.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.81.5e-184377135
                 GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                         Cs Cgt+kTplWR gp g+k+LCnaCG++ rk+++
  Kaladp0059s0358.1.p 43 CSDCGTSKTPLWRGGPAGPKSLCNACGIRSRKRRR 77
                         ********************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575126No hitNo description
SMARTSM004016.8E-133789IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.08E-133876No hitNo description
Gene3DG3DSA:3.30.50.103.6E-154176IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.85E-134292No hitNo description
PROSITE profilePS5011412.1634373IPR000679Zinc finger, GATA-type
PROSITE patternPS0034404368IPR000679Zinc finger, GATA-type
PfamPF003202.0E-164377IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MFDQKGSEIE EVKSNNSSTI TAALACDASS SSGSEGQPIK KTCSDCGTSK TPLWRGGPAG  60
PKSLCNACGI RSRKRRRALL GLTKPEEKRS KKTTGSTASN GGVTGVSGCS GEEKLTSHQK  120
LTGLTWQRST AEKYRRVLGE EEQAAVLLMA MAYGSVFA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17276RKRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00554DAPTransfer from AT5G49300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006419440.16e-42hypothetical protein CICLE_v10006161mg
RefseqXP_006488880.16e-42PREDICTED: GATA transcription factor 16-like
SwissprotQ9FJ104e-35GAT16_ARATH; GATA transcription factor 16
TrEMBLV4S1V47e-42V4S1V4_9R
STRINGVIT_05s0077g01450.t018e-40(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.12e-36GATA transcription factor 16